alchemist-incarnation-biochemistry/it.unibo.alchemist.model.implementations.conditions/BiomolPresentInEnv

BiomolPresentInEnv

class BiomolPresentInEnv<P : Position<out P>?> : GenericMoleculePresent<T>

Parameters

<P>

Position type

Constructors

BiomolPresentInEnv

open fun BiomolPresentInEnv( environment: Environment<Double, P>, node: Node<Double>, biomolecule: Biomolecule, concentration: Double)

Initialize condition for extra-cellular environment, implemented as a set of EnvironmentNode.

Functions

open fun cloneCondition(node: Node<T>, reaction: Reaction<T>): Condition<T>

open fun cloneCondition(node: Node<Double>, r: Reaction<Double>): BiomolPresentInEnv<P>

open fun getContext(): Context

abstract fun getContext(): Context

getInboundDependencies

fun getInboundDependencies(): ListSet<out Dependency>

getPropensityContribution

open fun getPropensityContribution(): Double

Propensity influence is computed through the binomial coefficient.

abstract fun getPropensityContribution(): Double

open fun getQuantity(): T

Allows to access the threshold.

open fun isValid(): Boolean

abstract fun isValid(): Boolean

open fun reactionReady()

open fun toString(): String

open fun toString(): String

Properties

val molecule: Molecule

val node: Node<T>