alchemist-incarnation-biochemistry/it.unibo.alchemist.model.implementations.conditions/BiomolPresentInNeighbor

BiomolPresentInNeighbor

class BiomolPresentInNeighbor : AbstractNeighborCondition<T>

Constructors

BiomolPresentInNeighbor

open fun BiomolPresentInNeighbor( environment: Environment<Double, out Any>, node: Node<Double>, molecule: Biomolecule, concentration: Double)

Functions

open fun cloneCondition(node: Node<T>, reaction: Reaction<T>): Condition<T>

open fun cloneCondition(node: Node<Double>, reaction: Reaction<Double>): BiomolPresentInNeighbor

fun getContext(): Context

abstract fun getContext(): Context

getInboundDependencies

fun getInboundDependencies(): ListSet<out Dependency>

getPropensityContribution

open fun getPropensityContribution(): Double

Override if desired behavior differs.

abstract fun getPropensityContribution(): Double

getValidNeighbors

fun getValidNeighbors(): Map<Node<T>, Double>

Searches in the given neighborhood which nodes satisfy the condition, and returns a list of valid neighbors.

open fun isValid(): Boolean

open fun reactionReady()

open fun toString(): String

Properties

val node: Node<T>