alchemist-incarnation-biochemistry/it.unibo.alchemist.model.implementations.properties/CircularDeformableCell

CircularDeformableCell

class CircularDeformableCell @JvmOverloads constructor( environment: Environment<Double, Euclidean2DPosition>, val node: Node<Double>, val maximumDiameter: Double, val rigidity: Double, val junctions: MutableMap<Junction, MutableMap<Node<Double>, Int>> = LinkedHashMap()) : AbstractNodeProperty<Double> , CircularDeformableCellProperty, CircularCellProperty

Base implementation of a CircularCellProperty.

Constructors

@JvmOverloads

fun CircularDeformableCell( environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, maximumDiameter: Double, rigidity: Double, junctions: MutableMap<Junction, MutableMap<Node<Double>, Int>> = LinkedHashMap())

Functions

addJunction

open override fun addJunction(junction: Junction, neighbor: Node<Double>)

Add a junction to the current node. junction the junction. neighbor the neighbor node at the other side of the junction.

addPolarizationVersor

open override fun addPolarizationVersor(versor: Euclidean2DPosition)

add versor to the polarization versor inside the cell; useful for considering the combination of various stimuli in a cell.

cloneOnNewNode

open override fun cloneOnNewNode(node: Node<Double>): NodeProperty<Double>

containsJunction

open override fun containsJunction(junction: Junction): Boolean

Return true if a junction is present in the current node, false otherwise. Note: a junction is considered present if the method junction.equals(j) return true. junction the junction.

getAllNodesLinkWithJunction

open override fun getAllNodesLinkWithJunction(): Set<Node<Double>>

Returns set of Nodes which are linked by a junction with the current node.

getNeighborLinkWithJunction

open override fun getNeighborLinkWithJunction(junction: Junction): Set<Node<Double>>

Returns a set of Nodes which are linked with the current node by a junction of the type junction.

removeJunction

open override fun removeJunction(junction: Junction, neighbor: Node<Double>)

Removes a junction from this node.

toString

open override fun toString(): String

Properties

diameter

open override val diameter: Double

The diameter of the cell.

junctions

open override val junctions: MutableMap<Junction, MutableMap<Node<Double>, Int>>

The map junction - node - quantity.

junctionsCount

open override val junctionsCount: Int

maximumDiameter

open override val maximumDiameter: Double

The max diameter that this cell can have, e.g. the diameter that this cell has if no other cell is around.

maximumRadius

open val maximumRadius: Double

The max radius that this cell can have, e.g. the radius that this cell has if no other cell is around.

node

open override val node: Node<Double>

polarizationVersor

open override var polarizationVersor: Euclidean2DPosition

radius

open override val radius: Double

The radius of the cell.

rigidity

open override val rigidity: Double

Cellular rigidity.